1. Sherry See Wai Leung, Jonathan Brewer, Luis A. Bagatolli, Jenifer L. Thewalt. Measuring molecular order for lipid membrane phase studies: Linear relationship between Laurdan generalized polarization and deuterium NMR order parameter. Biochimica et Biophysica Acta (BBA) - Biomembranes, 2019,
  2. Michiel Vellema, Mariana Diales Rocha, Sabrina Bascones, Sándor Zsebők, Jes Dreier, Stefan Leitner, Annemie Van der Linden, Jonathan Brewer, Manfred Gahr. Accelerated redevelopment of vocal skills is preceded by lasting reorganization of the song motor circuitry. eLife 2019;8:e43194 DOI: 10.7554/eLife.43194 
  3. Zachary J.Glover, Anne Højmark Bisgaard, Ulf Andersen, Megan J.Povey, Jonathan R.Brewer, Adam Cohen Simonsen. Cross-correlation analysis to quantify relative spatial distributions of fat and protein in super-resolution microscopy images of dairy gels. Food Hydrocolloids, 2019, 
  4. Brian B.Jensen, Zachary J.Glover, Simon M.M.Pedersen, Ulf Andersen, Lars Duelund, Jonathan R.Brewer. Label Free Noninvasive Spatially Resolved NaCl Concentration Measurements using Coherent Anti-Stokes Raman Scattering Microscopy applied to Butter. Food Chemistry, 2019, 297, 124881,  
  5. I.Iachina and J.R.Brewer. Strain Dependent Structural Changes in Major and Minor Ampullate spider silk revealed by Two-Photon Excitation Polarization. Biomacromolecules, DOI: 10.1021/acs.biomac.9b00368
  6. I.Iachina, I.E.Antonescu, J.Dreier, J.A.Sørensen, J.R.Brewer. The nanoscopic molecular pathway through human skin. Biochimica et Biophysica Acta (BBA) - General Subjects, 2019,
  7. Florian Lüskow, Hans Ulrik Riisgård, Vita Solovyeva, Jonathan R Brewer. Seasonal changes in bacteria and phytoplankton biomass control the condition index of the demosponge Halichondria panicea in temperate Danish waters. Marine Ecology Progress Series, 2019 608, 119-132
  8. Zachary J.Glover, Carsten Ersch,  Ulf Andersen,  Melvin J.Holmes, Megan J. Povey, Jonathan R. Brewer, and Adam Cohen Simonsen. Super-resolution microscopy and empirically validated autocorrelation image analysis discriminates microstructures of dairy derived gels. Food Hydrocolloids, 2019,  90, 62-71
  9. Taewook Kang, Pia Jensen, Vita Solovyeva, Jonathan R. Brewer, and Martin R. Larsen. Dynamic changes in the protein localization in the nuclear environment in pancreatic β-cell after brief glucose stimulation. J. Proteome Res. 2018. DOI: 10.1021/acs.jproteome.7b00930
  10. Maria Bloksgaard, Bjarne Thorsted, Jonathan R Brewer, Jo G. R De Mey. Assessing Collagen and Elastin Pressure-Dependent Microarchitectures in Live, Human Resistance Arteries by Label-Free Fluorescence Microscopy. Journal of Visualized Experiments. 2018, 2395667395.


  11. Leißner T, Jensen PBW, Liu Y, Brewer JB, Fiutowski J, Rubahn HG, jelstrup-Hansen J. Mapping charge carrier density in organic thin-film transistors by time-resolved photoluminescence lifetime studies. 2017. 49: 69–75
  12. Pedersen MT, Brewer J, Duelund L, Hansen PL. 2017. On the gastrophysics of jellyfish preparation. International Journal of Gastronomy and Food Science.
  13. Bloksgaard M, Leurgans TM, Spronck B, Heusinkveld MH, Thorsted B, Rosenstand K, Nissen I, Hansen UM, Brewer JR, Bagatolli LA, Rasmussen LM, Irmukhamedov A, Reesink KD, De Mey JGR. 2017. Imaging and modeling of acute pressure-induced changes of collagen and elastin microarchitectures in pig and human resistance arteries. Am J Physiol Heart Circ Physiol. doi: 10.1152/ajpheart.00110.2017.
  14. Purc A, Koszarna B, Iachina I, Friese DH, Tasior M,  Sobczyk K, Pędziński T, Brewer J and Gryko DT. 2017. The impact of interplay between electronic and steric effects on the synthesis and the linear and non-linear optical properties of diketopyrrolopyrrole bearing benzofuran moieties. Organic Chemistry Frontiers, 10.1039/C6QO00869K.
  15. Eriksen AZ, Brewer J, Andresen TL, Urquhart AJ. 2017. The diffusion dynamics of PEGylated liposomes in the intact vitreous of the ex vivo porcine eye: A fluorescence correlation spectroscopy and biodistribution study. Int J Pharm, 2017. 522(1-2): 90-97.
  16. Cheniour M, Brewer J, Bagatolli L, Marcillat O, Granjon T. 2017. Evidence of proteolipid domain formation in an inner mitochondrial membrane mimicking model. Biochim Biophys Acta 1861(5 Pt A): 969-976.
  17. Brewer JR, Thoke HS, Stocka RP, Bagatolli LA. 2017. Enzymatic studies on planar supported membranes using a widefield fluorescence LAURDAN Generalized Polarization imaging approach. Biochim Biophys Acta 1859(5): 888-895.


  18. Thorsted B, Bloksgaard M, Groza A, Schousboe LP, Faergeman NJ, Sorensen JA, Svane-Knudsen V, Brewer JR. 2016. Biochemical and Bioimaging Evidence of Cholesterol in Acquired Cholesteatoma. Ann Otol Rhinol Laryngol 125:627-633.
  19. Nazir R, Thorsted B, Balčiūnas E, Mazur L, Deperasińska I, Samoć M, Brewer J, Farsari M, Gryko DT. 2016.. Journal of Materials Chemistry C. 4, 167-177.
  20. Leurgans TM, Bloksgaard M, Brewer JR, Bagatolli LA, Fredgart MH, Rosenstand K, Hansen ML, Rasmussen LM, Irmukhamedov A, De Mey JG. 2016. Endothelin‐1 shifts the mediator of bradykinin‐induced relaxation from NO to H2O2 in resistance arteries from patients with cardiovascular disease. British journal of pharmacology. 173(10), 1653–1664.
  21. Gomes MJ, Dreier J, Brewer J, Martins S, Brandl M, Sarmento B. 2016. A new approach for a blood-brain barrier model based on phospholipid vesicles: Membrane development and siRNA-loaded nanoparticles permeability. Journal of Membrane Science 503:8-15.
  22. Dreier J, Sorensen JA, Brewer JR. 2016. Superresolution and Fluorescence Dynamics Evidence Reveal That Intact Liposomes Do Not Cross the Human Skin Barrier. PLoS One 11:e0146514.
  23. Bhatia T, Cornelius F, Brewer J, Bagatolli LA, Simonsen AC, Ipsen JH, Mouritsen OG. 2016. Spatial distribution and activity of Na+/K+-ATPase in lipid bilayer membranes with phase boundaries. Biochimica et Biophysica Acta (BBA)-Biomembranes. 1858(6):1390-9. 


  24. Thoke HS, Tobiesen A, Brewer J, Hansen PL, Stock RP, Olsen LF, Bagatolli LA. 2015. Tight Coupling of Metabolic Oscillations and Intracellular Water Dynamics in Saccharomyces cerevisiae. PLoS One 10:e0117308.
  25. Simonsen AC, Dreier J, Solovyeva V, Jeppesen JC, Brewer J. 2015. Orientational Texture of Membrane Domains: Effect of Lipid Composition and Binding of a Bacterial Toxin. Biophysical Journal 108:18a-19a.
  26. Miotke L, Maity A, Ji H, Brewer J, Astakhova K. 2015. Enzyme-Free Detection of Mutations in Cancer DNA Using Synthetic Oligonucleotide Probes and Fluorescence Microscopy. PLoS One 10:e0136720.
  27. Leißner T, Kostiučenko O, Brewer JR, Rubahn H-G, Fiutowski J. 2015. Nanostructure induced changes in lifetime and enhanced second-harmonic response of organic-plasmonic hybrids. Applied Physics Letters 107:251102.
  28. Jeppesen JC, Solovyeva V, Brewer JR, Johannes L, Hansen PL, Simonsen AC. 2015. Slow Relaxation of Shape and Orientational Texture in Membrane Gel Domains. Langmuir 31:12699-12707.
  29. Bloksgaard M, Leurgans TM, Jensen INPS, Hansen ML, Brewer JR, Bagatolli LA, Marcussen N, Irmukhamedov A, Rasmussen LM, Mey JGRD. 2015. Elastin organization in pig and cardiovascular disease patients’ pericardial resistance arteries Journal of Vascular Research. 52(1):1-11.
  30. Bhatia T, Husen P, Brewer J, Bagatolli LA, Hansen PL, Ipsen JH, Mouritsen OG. 2015. Preparing giant unilamellar vesicles (GUVs) of complex lipid mixtures on demand: Mixing small unilamellar vesicles of compositionally heterogeneous mixtures. Biochim Biophys Acta 1848:3175-3180.


  31. Verano-Braga T, Miethling-Graff R, Wojdyla K, Rogowska-Wrzesinska A, Brewer JR, Erdmann H, Kjeldsen F. 2014. Insights into the cellular response triggered by silver nanoparticles using quantitative proteomics. ACS Nano 8:2161-2175.
  32. Miethling-Graff R, Rumpker R, Richter M, Verano-Braga T, Kjeldsen F, Brewer J, Hoyland J, Rubahn H-G, Erdmann H. 2014. Exposure to silver nanoparticles induces size-and dose-dependent oxidative stress and cytotoxicity in human colon carcinoma cells. Toxicology in Vitro. 28(7):1280-9
  33. Krzeszewski M, Thorsted B, Brewer J, Gryko DT. 2014. Tetraaryl-, pentaaryl-, and hexaaryl-1,4-dihydropyrrolo[3,2-b]pyrroles: synthesis and optical properties. J Org Chem 79:3119-3128.
  34. Krzeszewski M, Thorsted B, Brewer J, Gryko DT. 2014. Tetraaryl-, Pentaaryl-, and Hexaaryl-1, 4-dihydropyrrolo [3, 2-b] pyrroles: Synthesis and Optical Properties. The Journal of organic chemistry 79:3119-3128.
  35. Janiga A, Bednarska D, Thorsted B, Brewer J, Gryko DT. 2014. Quadrupolar, emission-tunable pi-expanded 1,4-dihydropyrrolo[3,2-b]pyrroles--synthesis and optical properties. Org Biomol Chem 12:2874-2881.
  36. Dreier J, Brewer J, Simonsen AC. 2014. Systematic variation of gel-phase texture in phospholipid membranes. Langmuir 30:10678-10685.
  37. Bloksgaard M, Brewer JR, Pashkovski E, Ananthapadmanabhan KP, Sorensen JA, Bagatolli LA. 2014. Effect of detergents on the physicochemical properties of skin stratum corneum: a two-photon excitation fluorescence microscopy study. International Journal of Cosmetic Science 36:39-45.
  38. Alfonso-Garcia A, Mittal R, Lee ES, Potma EO. 2014. Biological imaging with coherent Raman scattering microscopy: a tutorial. J Biomed Opt 19:71407.


  39. Solanko LM, Honigmann A, Midtiby HS, Lund FW, Brewer JR, Dekaris V, Bittman R, Eggeling C, Wustner D. 2013. Membrane Orientation and Lateral Diffusion of BODIPY-Cholesterol as a Function of Probe Structure. Biophysical Journal 105:2082-2092.
  40.  Rasmussen TE, Jauffred L, Brewer JR, Vogel S, Torbensen ER, Lagerholm BC, Oddershede L, Arnspang EC. 2013. Single Molecule Applications of Quantum Dots. Journal of Modern Physics doi:10.4236/jmp.2013.411A2002
  41. Dreier J, Brewer JR, Simonsen AC. 2013. Hydrophobic mismatch triggering texture defects in membrane gel domains. The Journal of Physical Chemistry Letters 4:2789-2793.
  42. Brewer J, Bloksgaard M, Kubiak J, Sørensen JA, Bagatolli La. 2013. Spatially resolved two-color diffusion measurements in human skin applied to transdermal liposome penetration. The Journal of investigative dermatology 133:1260-1268.
  43. Bloksgaard M, Brewer J, Bagatolli LA. 2013. Structural and dynamical aspects of skin studied by multiphoton excitation fluorescence microscopy-based methods. Eur J Pharm Sci 50:586-594.


  44. Stock RP, Brewer J, Wagner K, Ramos-Cerrillo B, Duelund L, Jernshoj KD, Olsen LF, Bagatolli LA. 2012. Sphingomyelinase D Activity in Model Membranes: Structural Effects of in situ Generation of Ceramide-1-Phosphate. Plos One, 7, e36003
  45. Iwai I, Han H, den Hollander L, Svensson S, Oefverstedt L-G, Anwar J, Brewer J, Bloksgaard M, Laloeuf A, Nosek D, Masich S, Bagatolli LA, Skoglund U, Norlen L. 2012. The Human Skin Barrier Is Organized as Stacked Bilayers of Fully Extended Ceramides with Cholesterol Molecules Associated with the Ceramide Sphingoid Moiety. Journal of Investigative Dermatology 132:2215-2225.
  46. Dreier J, Brewer J, Simonsen AC. 2012. Texture defects in lipid membrane domains. Soft Matter 8:4894-4904.
  47. Bloksgaard M, Svane-Knudsen V, Sorensen JA, Bagatolli L, Brewer J. 2012. Structural characterization and lipid composition of acquired cholesteatoma: a comparative study with normal skin. Otol Neurotol 33:177-183.
  48. Bloksgaard M, Bek S, Marcher A-B, Neess D, Brewer J, Hannibal-Bach HK, Helledie T, Fenger C, Due M, Berzina Z, Neubert R, Chemnitz J, Finsen B, Clemmensen A, Wilbertz J, Saxtorph H, Knudsen J, Bagatolli L, Mandrup S. 2012. The acyl-CoA binding protein is required for normal epidermal barrier function in mice. Journal of lipid research 53:2162-2174.
  49. Arnspang EC, Brewer JR, Lagerholm BC. 2012. Multi-color single particle tracking with quantum dots. PLoS One 7:e48521.
  50. Andersen TE, Khandige S, Madelung M, Brewer J, Kolmos HJ, Moller-Jensen J. 2012. Escherichia coli Uropathogenesis In Vitro: Invasion, Cellular Escape, and Secondary Infection Analyzed in a Human Bladder Cell Infection Model. Infection and Immunity 80:1858-1867.


  51. Wustner D, Brewer JR, Bagatolli L, Sage D. 2011. Potential of Ultraviolet Wide-Field Imaging and Multiphoton Microscopy for Analysis of Dehydroergosterol in Cellular Membranes. Microscopy Research and Technique 74:92-108.
  52. Kubiak J, Brewer J, Hansen S, Bagatolli LA. 2011. Lipid lateral organization on giant unilamellar vesicles containing lipopolysaccharides. Biophysical journal 100:978-986.
  53. Andersen AZ, Duelund L, Brewer J, Nielsen PK, Birk T, Garde K, Kallipolitis B, Krebs N, Bagatolli L. 2011. Biophysical Evaluation of Food Decontamination Effects on Tissue and Bacteria. Food biophysics 6:170-182.


  54. Wustner D, Larsen AL, Faergeman NJ, Brewer JR, Sage D. 2010. Selective Visualization of Fluorescent Sterols in Caenorhabditis elegans by Bleach-Rate-Based Image Segmentation. Traffic 11:440-454.
  55. Bruggemann DA, Brewer J, Risbo J, Bagatolli L. 2010. Second Harmonic Generation Microscopy: A Tool for Spatially and Temporally Resolved Studies of Heat Induced Structural Changes in Meat. Food Biophysics 5:1-8.
  56. Brewer J, Schiek M, Rubahn HG. 2010. Nonlinear optical properties of CNHP4 nanofibers: Molecular dipole orientations and two photon absorption cross-sections. Optics Communications 283:1514-1518.
  57. Brewer J, Bernardino de la Serna J, Wagner K, Bagatolli LA. 2010. Multiphoton excitation fluorescence microscopy in planar membrane systems. Biochimica et biophysica acta 1798:1301-1308


  58. Bjorkqvist YJE, Brewer J, Bagatolli LA, Slotte JP, Westerlund B. 2009. Thermotropic behavior and lateral distribution of very long chain sphingolipids. Biochimica Et Biophysica Acta-Biomembranes 1788:1310-1320.
  59. Bernchou U, Brewer J, Midtiby HS, Ipsen JH, Bagatolli LA, Simonsen AC. 2009. Texture of Lipid Bilayer Domains. Journal of the American Chemical Society 131:14130.


  60. Schiek M, Balzer F, Al-Shamery K, Brewer JR, Lutzen A, Rubahn HG. 2008. Organic molecular nanotechnology. Small 4:176-181.
  61. Brewer J, Schiek M, Wallmann I, Rubahn HG. 2008. First order optical nonlinearities chi(2) for organic nanofibers from functionalized para-phenylenes. Optics Communications 281:3892-3896.


  62. Maibohm C, Brewer JR, Sturm H, Balzer F, Rubahn HG. 2006. Bleaching and coating of organic nanofibers. Journal of Applied Physics 100, 054304.
  63. Brewer J, Schiek M, Luetzen A, Al-Shamery K, Rubahn HG. 2006. Nanofiber frequency doublers. Nano Letters 6:2656-2659.


  64. Brewer J, Rubahn HG. 2005. Angular distribution of luminescence from quasi single crystalline organic nanofibers, In Stutzmann M (ed), Physica Status Solidi C - Conferences and Critical Reviews, 2 (12), 4058-4061.
  65. Brewer J, Maibohm C, Jozefowski L, Bagatolli L, Rubahn HG. 2005. A 3D view on free-floating, space-fixed and surface-bound para-phenylene nanofibres. Nanotechnology 16:2396-2401.


  66. Burchianti A, Marinelli C, Bogi A, Brewer JR, Rubahn K, Rubahn H-G. 2004. Light induced atomic desorption from porous silica. Europhysics Letters 67:983-989.
  67. Brewer JR, Burchianti A, Marinelli C, Mariotti E, Moi L, Rubahn K, Rubahn H-G. 2004. Pulsed laser desorption of alkali atoms from PDMS. Applied Surface Science 228:40-47.
  68. Brewer J, Rubahn HG. 2004. Laser-induced alkali atom desorption from thin sodium films on quartz prisms. Chemical Physics 303:1-6.
  69. Brewer J, Bordo VG, Kasprowicz MJ, Rubahn HG. 2004. Dynamics of alkali-metal atom photodesorption from polymer thin films. Physical Review A 69, 062902 .